Abstract: To address the challenges in dynamic modeling and effectiveness evaluation of anti-missile command and control (C2) modes, and in response to the characteristics of anti-missile operations−such as numerous operational elements, high real-time performance, and strong dynamicity−a modeling and evaluation method that combines complex network theory with super-real-time simulation deduction is proposed. First, based on complex network theory, the C2 systems under hierarchical and mesh C2 modes are modeled as complex network graph models. Second, static effectiveness evaluation indicators are constructed to simulate and analyze the static topological characteristics of different C2 modes. Finally, to realize the mapping from the static to the dynamic, large-scale anti-missile operational scenarios are designed based on the super-real-time simulation deduction system, and effectiveness indicators with dynamic characteristics are built. The command collaboration effectiveness of hierarchical, mesh, and hybrid C2 modes in different operational phases is compared and analyzed, and the effectiveness of the method is verified through sensitivity analysis. The research results show that this method has guiding and reference significance for the modeling and effectiveness evaluation of C2 modes of anti-missile operations.